Use the tools below to upload and setup your analysis framework. Then press the Next button at the end of this page to move to the next step. Click the Pick-up an example button bellow to see how this tool works across different case studies, or refer to the Help Page.
Use this tool to download statistical analysis for a specific experiment included in Expression Atlas. Please note that this process will delete all the files that have been already uploaded.
Use this tool to to find pathways of interest to be included in you analysis. Your search will be based on the selected database (). Write your pathway of interest to find the exact name as provided by the specific database.
Use this tool to to find genes of interest to be included in you analysis. Your search will be based on the selected database (). Write your gene of interest to find the exact name as provided by the specific database.
Make sure that all the required files have been uploaded and then press the green button to create the pathway expression network.
PathExNET: creating pathway networks form gene expression statistics
Minadakis, G., Fuentes, A. M. P., Tsouloupas, G., Papatheodorou, I., & Spyrou, G. M. (2021). PathExNET: A tool for extracting pathway expression networks from gene expression statistics. Computational and Structural Biotechnology Journal, 19, 4336-4344.Department of Bioinformatics, The Cyprus Institute of Neurology & Genetics. © 2020