PathExNET - Pathway Expression Networks

Step 1
Upload Content
Step 2
Create Pathway-Expression Networks

Step 1: Upload Content

Use the tools below to upload and setup your analysis framework. Then press the Next button at the end of this page to move to the next step. Click the Pick-up an example button bellow to see how this tool works across different case studies, or refer to the Help Page.

Select Experiment Type info

Select Reference Network info

Upload your files here info

Pick-up an example

Import from Expression Atlas info

Search Pathways info

Search Genes info

Framework Actions

Step 2: Create Pathway-Expression Networks

Make sure that all the required files have been uploaded and then press the green button to create the pathway expression network.

Select score to work with info

Select network filter info

Action

PathExNET: creating pathway networks form gene expression statistics

Reference Minadakis, G., Fuentes, A. M. P., Tsouloupas, G., Papatheodorou, I., & Spyrou, G. M. (2021). PathExNET: A tool for extracting pathway expression networks from gene expression statistics. Computational and Structural Biotechnology Journal, 19, 4336-4344.